lamindb

A data framework for biology.

Tracking notebooks, scripts & functions.

track([transform, project, params, new_run, ...])	Track a global run of your Python session.
finish([ignore_non_consecutive])	Finish a tracked run.
tracked([uid])	Mark a function as tracked with this decorator.

Registries.

Artifact()	Datasets & models stored as files, folders, or arrays.
Transform()	Data transformations.
Run()	Runs.
ULabel()	Universal labels.
User()	Users.
Storage()	Storage locations.
Feature()	Dataset dimensions.
Schema()	Schemas.
Param(*args, **kwargs)	Parameters of runs & models.
Collection()	Collections of artifacts.
Project(*args, **kwargs)	Projects.
Space(*args, **kwargs)	Spaces.
Reference(*args, **kwargs)	References such as internal studies, papers, documents, or URLs.
Person(*args, **kwargs)	People.

Curators & integrations.

curators	Curators.
integrations	Integrations.

Key functionality.

connect([instance])	Connect to an instance.
view([df, limit, modules, registries])	View metadata.
save(records[, ignore_conflicts])	Bulk save to registries & storage.
UPath(*args[, protocol])	Paths: low-level key-value access to files/objects.
settings	Global settings (Settings).

Low-level functionality.

context	Global run context (Context).
errors	Errors.
setup	Setup & configure LaminDB.
base	Base library.
models	Models library.
core	Core library.

Backward compatibility.

FeatureSet	alias of Schema
Curator	alias of CatManager